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2010

Contribution to journal

Schou, T. W., Labouriau, R., Permin, A., Christensen, J. P., Sørensen, P., Cu, H. P., Nguyen, V. K. & Juul-Madsen, H. R. (2010). MHC haplotype and susceptibility to experimental infections (Salmonella Enteritidis, Pasteurella multocida orAscaridia galli) in a commercial and an indigenous chicken breed. Veterinary Immunology and Immunopathology, 135(1-2), 52-63. https://doi.org/10.1016/j.vetimm.2009.10.030

Podolskij, M. & Ziggel, D. (2010). New tests for jumps in semimartingale models. Statistical Inference for Stochastic Processes, 13(1), 15-41. https://doi.org/10.1007/s11203-009-9037-8

Podolskij, M. & Vetter, M. (2010). Understanding limit theorems for semimartingales: A short survey. Statistica Neerlandica, 64(3), 329-351. https://doi.org/10.1111/j.1467-9574.2010.00460.x

Mühlfeld, C., Papadakis, T., Krasteva, G., Nyengaard, J. R., Hahn, U. & Kummer, W. (2010). An unbiased stereological method for efficiently quantifying the innervation of the heart and other organs based on total length estimations. Journal of Applied Physiology, 108(5), 1402-1409. https://doi.org/10.1152/japplphysiol.01013.2009

Mühlfeld, C., Weibel, E. R., Hahn, U., Kummer, W., Nyengaard, J. R. & Ochs, M. (2010). Is length an appropriate estimator to characterize pulmonary alveolar capillaries? A critical evaluation in the human lung. Anatomical Record, 293(7), 1270-1275. https://doi.org/10.1002/ar.21158

Koets, A., Santema, W., Oostenriik, D., Keestra, M., Mertens, H., Overdijk, M., Labouriau, R., Franken, P., Frijters, A., Nielsen, M. & Rutten, V. (2010). Susceptibility to paratuberculosis infection in cattle is associated withsingle nucleotide polymorphisms in Toll-like receptor 2 which modulate immune responses against Mycobacterium avium subspecies paratuberculosis. Preventive Veterinary Medicine, 93(4), 305-315. https://doi.org/10.1016/j.prevetmed.2009.11.008

Jacod, J., Podolskij, M. & Vetter, M. (2010). Limit Theorems for moving averages of discretized processes plus noise. Annals of Statistics, 38(3), 1478-1545. https://doi.org/10.1214/09-AOS756

Friggens, N. C. & Labouriau, R. (2010). Probability of pregnancy as affected by oestrus number and days to first oestrus in dairy cows of three breeds and parities. Animal Reproduction Science, 118(2), 155-162. https://doi.org/10.1016/j.anireprosci.2009.08.009

Edwards, D., Abreu, G. & Labouriau, R. (2010). Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests. BMC Bioinformatics, 11(1). https://doi.org/10.1186/1471-2105-11-18

Christensen, K., Kinnebrock, S. & Podolskij, M. (2010). Pre-averaging estimators of the ex-post covariance matrix in noisy diffusion models with non-synchronous data. Journal of Econometrics, 159(1), 116-133. https://doi.org/10.1016/j.jeconom.2010.05.001

Christensen, K., Oomen, R. & Podolskij, M. (2010). Realised quantile-based estimation of the integrated variance. Journal of Econometrics, 159(1), 74-98. https://doi.org/10.1016/j.jeconom.2010.04.008

Birck, A., Christensen, P., Labouriau, R., Pedersen, J. & Borchersen, S. (2010). In vitro induction of the acrosome reaction in bull sperm and the relationship to field fertility using low-dose inseminations. Theriogenology, 73(9), 1180-1191. https://doi.org/10.1016/j.theriogenology.2009.10.010

Basse-O'Connor, A., Graversen, S.-E. & Pedersen, J. (2010). Martingale-type processes indexed by the real line. Alea, 7, 117-137. http://alea.impa.br/articles/v7/07-06.pdf

Basse-O'Connor, A. & Graversen, S.-E. (2010). Path and semimartingale properties of chaos processes. Stochastic Processes and Their Applications, 120(4), 522-540. https://doi.org/10.1016/j.spa.2009.12.001

Basse-O'Connor, A. (2010). Representation of Gaussian semimartingales with applications to the covariance function. Stochastics: An International Journal of Probability and Stochastic Processes , 82(4), 381-401. https://doi.org/10.1080/17442500903251857

Auneau, J. M. & Jensen, E. B. V. (2010). Expressing intrinsic volumes as rotational integrals. Advances in Applied Mathematics, 45(1), 1-11. https://doi.org/10.1016/j.aam.2009.11.010

Andersen, K., Louveaux, Q. & Weismantel, R. (2010). An analysis of mixed integer sets based on lattice point free convex sets. Mathematics of Operations Research, 35(1), 233-256. https://doi.org/10.1287/moor.1090.0439

Andersen, K. & Pochet, Y. (2010). Coefficient strengthening: A tool for reformulating mixed-integer programs. Mathematical Programming, 122(1), 121-154. https://doi.org/10.1007/s10107-008-0243-8

Andersen, K., Louveaux, Q. & Weismantel, R. (2010). Mixed-integer sets from two rows of two adjacent simplex bases. Mathematical Programming, 124/1-2, 455-480. https://doi.org/10.1007/s10107-010-0376-4

Abreu, G. C. G., Edwards, D. & Labouriau, R. (2010). High-Dimensional Graphical Model Search with the gRapHD R Package. Journal of Statistical Software, 37(1), 1-18. http://www.jstatsoft.org/v37/i01/

2009

Working Paper

Abreu, G. C. G. D., Labouriau, R. & Edwards, D. (2009). High-dimensional Graphical Model Search with gRapHD R Package. ArXiv. http://arxiv.org/abs/0909.1234

2009

Thesis

Andersen, L. N. (2009). Loss Rates and Structural Properties of Reflected Stochastic Processes. Aarhus Universitetsforlag.

2009

Working Paper

Stark, A. K., Gundersen, H. J. G., Gardi, J. E., Pakkenberg, B. & Hahn, U. (2009). The saucor, a new stereological tool for analysing the spatial distributions of cells, exempliﬁed by human neocortical neurons and glial cells. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Görtz, S. & Klose, A. (2009). A subgradient-based branch-and-bound algorithm for the capacitated facility location problem. Department of Mathematical Sciences, Aarhus University. http://www.imf.au.dk/publs?id=702

Andersen, L. N. & Asmussen, S. (2009). Local time asymptotics for centered Lévy processes with two-sided reflection. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Andersen, L. N. (2009). Subexponential loss rate asymptotics for Lévy processes. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

2009

Contribution to conference

Labouriau, R. & Madsen, P. (2009). Modelling censored discrete time data with a view towards applications in animal quantitative genetics. Poster session presented at Annual Meeting of of the European Association for Animal Production, EAAP, Barcelona, Spain.

Greilich, S., Grzanka, L., Hahn, U., Kiderlen, M., Bassler, N., Andersen, C. E. & Jäkel, O. (2009). Amorphous track models: a numerical comparison study. Poster session presented at Neutron and Ion Dosimetry Symposium (NEUDOS-11), Cape Town, South Africa.

Abreu, G. C. G., Labouriau, R. & Buitenhuis, A. J. (2009). Altered gene co-ecpression profile in extreme feather-pecking behaviour. Poster session presented at Annual Meeting of of the European Association for Animal Production, EAAP, Barcelona, Spain.

2009

Contribution to book anthology

Engholm, R., Karstoft, H. & Jensen, E. B. V. (2009). Adaptive kernel filtering used in video processing. In Visual Communications and Image Processing 2009 (pp. 72571E). SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.808155

2009

Contribution to journal

Labouriau, R. & Madsen, P. (2009). Modelling censored discrete time data with a view towards applications in animal quantitative genetics. EAAP Book of Abstracts, 604. http://www.wageningenacademic.com/_clientfiles/EAAP/eaap2009-e.pdf

Abreu, G. C. G., Labouriau, R. & Buitenhuis, A. J. (2009). Altered gene co-expression profile in extreme feather-pecking behaviour. EAAP Book of Abstracts, 287. http://www.wageningenacademic.com/_clientfiles/EAAP/eaap2009-e.pdf

West, M. J., Bach, G., Søderman, A. & Jensen, J. L. (2009). Synaptic contact number and size in stratum radiatum CA1 of APP/PS1DeltaE9 transgenic mice. Neurobiology of Aging, 30(11), 1756-76. https://doi.org/10.1016/j.neurobiolaging.2008.01.009

Podolskij, M. & Vetter, M. (2009). Bipower-type estimation in a noisy diffusion setting. Stochastic Processes and Their Applications, 119(9), 2803-2831. https://doi.org/10.1016/j.spa.2009.02.006

Podolskij, M. & Vetter, M. (2009). Estimation of volatility functionals in the simultaneous presence of microstructure noise and jumps. Bernoulli, 15(3), 634-658. https://doi.org/10.3150/08-BEJ167

Pawlas, Z., Nyengaard, J. R. & Jensen, E. B. V. (2009). Particle sizes from sectional data. Biometrics, 65(1), 216-224. https://doi.org/10.1111/j.1541-0420.2008.01019.x

Østergaard, M., Ernst, A., Labouriau, R. S., Dagiliené, E., Krarup, H. B., Christensen, M., Thorsgaard, N., Jacobsen, B. A., Tage-Jensen, U., Overvad, K., Autrup, H. & Andersen, V. (2009). Cyclooxygenase-2, multidrug resistance 1, and breast cancer resistance protein gene polymorphisms and inflammatory bowel disease in the Danish population. Scandinavian Journal of Gastroenterology, 44(1), 65-73. https://doi.org/10.1080/00365520802400826

Labouriau, R., Kjaer, J. B., Abreu, G. C. G., Hedegaard, J. & Buitenhuis, A. J. (2009). Analysis of severe feather pecking behavior in a high feather pecking selection line. Poultry Science, 88, 2052-2062. https://doi.org/10.3382/ps.2009-00113

Kiderlen, M. & Meschenmoser, D. (2009). Error bounds for surface area estimators based on Crofton's formula. Image Analysis and Stereology, 28, 165-177. http://www.wise-t.com/ias/article.php?id=250&year=2009&issue=11

Jensen, J. L. (2009). A note on the linear memory Baum-Welch algorithm. Journal of Computational Biology, 16(9), 1209-1210. https://doi.org/10.1089/cmb.2008.0178

Jacod, J., Li, Y., Mykland, P. A., Podolskij, M. & Vetter, M. (2009). Microstructure noise in the continuous case: The pre-averaging approach. Stochastic Processes and Their Applications, 119(7), 2249-2276. https://doi.org/10.1016/j.spa.2008.11.004

Hou, Y., Madsen, P., Labouriau, R., Zhang, Y., Lund, M. S. & Su, G. (2009). Genetic analysis of days from calving to first insemination and days open in Danish Holsteins using different models and censoring scenarios. Journal of Dairy Science, (92), 1229-1239. https://doi.org/10.3168/jds.2008-1556

Hobolth, A. & Stone, E. (2009). Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution. Annals of Applied Statistics, 3(3), 1204-1231. https://doi.org/10.1214/09-AOAS247

Hobolth, A. & Wiuf, C. H. (2009). The genealogy, site frequency spectrum and ages of two nested mutant alleles. Theoretical Population Biology, 75(4), 260-265. https://doi.org/10.1016/j.tpb.2009.02.001

Görtz, S. & Klose, A. (2009). Analysis of some greedy algorithms for the single-sink fixed-charge transportation problem. Journal of Heuristics, 15(4), 331-349. https://doi.org/10.1007/s10732-007-9065-8

Gardner, R. & Kiderlen, M. (2009). A new algorithm for 3D reconstruction from support functions. I E E E Transactions on Pattern Analysis and Machine Intelligence, 31(3), 556-562. https://doi.org/10.1109/TPAMI.2008.190

Egefjord, L., Jensen, J., Bang-Berthelsen, C., Petersen, A. B., Smidt, K., Schmitz, O., Karlsen, A. E., Pociot, F., Chimienti, F., Rungby, J. & Magnusson, N. (2009). Zinc transporter gene expression is regulated by pro-inflammatory cytokines: a potential role for zinc transporters in beta-cell apoptosis? B M C Endocrine Disorders, 9(1), 7. https://doi.org/10.1186/1472-6823-9-7

Dutheil, J., Ganapathy, G., Hobolth, A., Mailund, T., Uyenoyama, M. & Schierup, M. H. (2009). Ancestral population genomics: the coalescent hidden Markov model approach. Genetics, 183(1), 259–274. https://doi.org/10.1534/genetics.109.103010

Christensen, K., Podolskij, M. & Vetter, M. (2009). Bias-correcting the realised range-based variance in the presence of market microstructure noise. Finance and Stochastics, 13(2), 239-268. https://doi.org/10.1007/s00780-009-0089-9

Birck, A., Labouriau, R. & Christensen, P. (2009). Dynamics of the induced acrosome reaction in boar sperm evaluated by flow cytometry. Animal Reproduction Science, 115(1-4), 124-136. https://doi.org/10.1016/j.anireprosci.2008.10.017

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Lars Madsen